| Name | Version | Summary | date |
| picked-group-fdr |
0.8.0 |
Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments |
2025-01-16 12:41:04 |
| triqler |
0.8.0 |
Triqler: TRansparent Identification-Quantification-Linked Error Rates |
2025-01-07 12:31:12 |
| quantms-utils |
0.0.18 |
Python scripts and helpers for the quantMS workflow |
2024-12-20 18:30:19 |
| quantms-rescoring |
0.0.2 |
quantms-rescoring: Python scripts and helpers for the quantMS workflow |
2024-12-19 05:41:45 |
| pixelgen-pixelator |
0.19.0 |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays. |
2024-12-10 21:05:12 |
| misugaru |
0.1.11 |
A mokapot wrapper with high protein content |
2024-12-10 14:07:19 |
| peptdeep |
1.3.1 |
The AlphaX deep learning framework for Proteomics |
2024-12-10 09:36:57 |
| ms2rescore |
3.1.4 |
MS²Rescore: Sensitive PSM rescoring with predicted MS² peak intensities and retention times. |
2024-12-04 16:44:38 |
| alphadia |
1.9.1 |
A novel proteomics search engine for DIA data based on end-to-end transfer learning. |
2024-11-29 09:38:50 |
| pydiaid |
0.0.29 |
An open-source Python package of the AlphaPept ecosystem |
2024-11-28 11:13:19 |
| deeplc |
3.1.3 |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning. |
2024-11-22 08:19:05 |
| CPred |
0.1.1 |
CPred: A deep learning framework for predicting the charge state distribution in modified and unmodified peptides in ESI |
2024-09-30 13:00:46 |
| xlsxreport |
0.1.1 |
Automated generation of formatted excel reports from MS results |
2024-09-21 11:02:27 |
| flippr |
0.1.8 |
FragPipe Limited-Proteolysis Processor (FLiPPR) is modular, fast, and easy-to-use data processing tool for LiP-MS & LFQ-based experiments analyzed in FragPipe |
2024-09-03 19:25:36 |
| fennet |
0.0.1 |
Fennet |
2024-08-23 05:02:48 |
| pyXLMS |
0.0.2 |
A python package to process protein cross-linking data. |
2024-08-22 12:50:47 |
| alphaDIA |
1.7.2 |
A novel proteomics search engine for DIA data based on end-to-end transfer learning. |
2024-07-15 13:36:43 |
| pylgrams |
1.0.1 |
A Python-based gloss of the RaMS package in R |
2024-05-31 18:42:35 |
| pdeep |
0.0.1 |
pDeep |
2024-05-12 15:58:45 |
| pglyco |
0.0.1 |
pGlyco |
2024-04-18 22:31:04 |